pyphi.substrate

Represents the substrate of interest.

This is the primary object of PyPhi and the context of all φ and Φ computation.

Functions

all_sias(substrate, state[, candidates, ...])	Return SIAs for every candidate system of the substrate.
complexes(substrate, state[, candidates])	Return the complexes of the substrate in its current state.
irreducible_purviews(cm, direction, ...)	Return all purviews which are irreducible for the mechanism.
irreducible_sias(substrate, state[, candidates])	Return candidate SIAs with φₛ > 0.
maximal_complex(substrate, state[, candidates])	Return the complex with maximum φₛ over the substrate.
possible_complexes(substrate, state, **kwargs)	Return a generator of systems of a substrate that could be a complex.
reachable_systems(substrate, indices, state, ...)	A generator over all systems in a valid state.
systems(substrate, state, **kwargs)	Return a generator of all possible systems of a substrate.

Classes

Substrate([tpm, cm, node_labels, marginals, ...])

A substrate of nodes.