pyphi.validate

Methods for validating user input.

Functions

connectivity(cm, factored_tpm)	Validate that a connectivity matrix is not under-specified.
connectivity_matrix(cm)	Validate the given connectivity matrix.
direction(direction[, allow_bi])	Validate that the given direction is one of the allowed constants.
directions(directions, **kwargs)	Validate each direction in an iterable.
is_substrate(substrate)	Validate that the argument is a Substrate.
node_labels(node_labels, node_indices)	Validate that there is a label for each node.
node_states(state, alphabet_sizes)	Check that each state entry is a valid index into its node's alphabet.
non_overlapping(complexes)	Validate that complexes have pairwise-disjoint units (exclusion).
relata(relata)	Validate a set of relata.
state_length(state, size)	Check that the state is the given size.
state_reachable(system)	Raise StateUnreachableForwardsError if the state is unreachable.
substrate(n)	Validate a Substrate.
system(s)	Validate a System.
system_partition(partition, node_indices)	Check that the partition covers only the given nodes.
transition_states(substrate, before_state, ...)	Raise if the observed state pair is impossible under the dynamics.