<?xml version='1.0' encoding='utf-8'?>
<urlset xmlns="http://www.sitemaps.org/schemas/sitemap/0.9"><url><loc>https://pyphi.readthedocs.io/en/latest/citing.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/contributing.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/conventions.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/examples/IIT_4.0_demo.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/getting-started/index.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/howto/ai-assistants.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/howto/build-substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/howto/cache.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/howto/campaigns.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/howto/chtc.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/howto/configure.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/howto/earlier-versions.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/howto/estimate-cost.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/howto/export.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/howto/faq.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/howto/grain-search.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/howto/index.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/howto/landscape.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/howto/mcp-server.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/howto/parallel.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/howto/query-relations.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/howto/read-result.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/howto/save-load.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/howto/sweep.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/howto/tie-breaking.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/howto/visualize.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/index.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/migration/from-substrate-modeler.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/migration/index.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/migration/migration-2.0.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.actual.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.actual.Transition.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.actual.TransitionSystem.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.actual.account.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.actual.causal_nexus.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.actual.directed_account.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.actual.events.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.actual.extrinsic_events.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.actual.nexus.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.actual.nice_true_ces.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.actual.sia.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.actual.transitions.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.actual.true_ces.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.actual.true_events.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.analyze.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.automorphism.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.automorphism.are_structures_isomorphic.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.automorphism.are_substrates_isomorphic.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.automorphism.canonical_state.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.automorphism.structure_signature.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.automorphism.substrate_automorphisms.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.automorphism.substrate_canonical_form.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.cache.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.cache.cache.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.cache.cache_utils.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.cache.cache_utils.ByteBoundedStore.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.cache.cache_utils.entry_weight.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.cache.cache_utils.memory_full.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.cache.cache_utils.memory_limit_bytes.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.cache.content.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.cache.content.ContentCache.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.cache.disk.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.cache.disk.DiskCache.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.cache.disk.maybe_disk_cached.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.cache.disk.result_cache_key.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.cache.policy.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.cache.policy.CachePolicy.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.cache.registry.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.cache.registry.clear.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.cache.registry.clear_all.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.cache.registry.info.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.cache.registry.register.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.cache.registry.unregister.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.campaign.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.campaign.CESShardTask.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.campaign.CampaignStatus.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.campaign.CampaignTask.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.campaign.CampaignTaskOutput.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.campaign.CellOutput.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.campaign.SIAShardTask.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.campaign.ScopeReport.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.campaign.collect.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.campaign.merge.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.campaign.merge.build_distinction.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.campaign.merge.merge_purview_rias.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.campaign.merge.merge_sia_strides.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.campaign.merge.merge_stride_rias.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.campaign.prepare.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.campaign.prepare_ces.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.campaign.runner.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.campaign.runner.partition_stride_entries.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.campaign.runner.run_task.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.campaign.runner.sia_stride_entries.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.campaign.scope.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.campaign.scope.AxisScope.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.campaign.scope.CESScope.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.campaign.scope.resolve_scope.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.campaign.scope_report.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.campaign.shards.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.campaign.shards.ShardSpec.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.campaign.shards.bottleneck_order.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.campaign.shards.cut_present_edges.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.campaign.shards.enumerate_partition_stride.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.campaign.shards.enumerate_system_partition_stride.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.campaign.shards.plan_ces_shards.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.campaign.shards.plan_sia_shards.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.campaign.status.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.compositional_state.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.compositional_state.CompositionalState.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.condensation.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.condensation.Candidate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.condensation.CondensationOutcome.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.condensation.PendingCandidate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.condensation.exclusion_cascade.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.condensation.exclusion_records.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.condensation.gated_exclusion_cascade.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.condensation.iit3_exclusion_cascade.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.conf.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.conf.constraints.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.conf.constraints.ConfigConstraint.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.conf.constraints.check_config_constraints.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.conf.constraints.register_constraint.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.conf.formalism.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.conf.formalism.ActualCausationConfig.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.conf.formalism.FormalismConfig.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.conf.formalism.IITConfig.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.conf.infrastructure.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.conf.infrastructure.InfrastructureConfig.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.conf.numerics.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.conf.numerics.NumericsConfig.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.conf.presets.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.conf.snapshot.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.conf.snapshot.ConfigSnapshot.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.connectivity.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.connectivity.apply_boundary_conditions_to_cm.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.connectivity.block_cm.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.connectivity.block_reducible.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.connectivity.causally_significant_nodes.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.connectivity.get_inputs_from_cm.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.connectivity.get_outputs_from_cm.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.connectivity.is_full.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.connectivity.is_strong.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.connectivity.is_weak.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.connectivity.relevant_connections.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.connectivity.subadjacency.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.convert.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.convert.b2l.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.convert.b2l_sbs.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.convert.b2s.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.convert.be2le.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.convert.be2le_state_by_state.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.convert.be_index2state.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.convert.l2b.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.convert.l2b_sbs.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.convert.l2s.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.convert.le2be.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.convert.le2be_state_by_state.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.convert.le_index2state.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.convert.nodes2indices.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.convert.nodes2state.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.convert.reverse_bits.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.convert.s2b.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.convert.s2l.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.convert.sbn2sbs.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.convert.sbs2sbn.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.convert.sbs_to_multidimensional.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.convert.state2be_index.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.convert.state2le_index.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.convert.state_by_node2state_by_state.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.convert.state_by_state2state_by_node.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.convert.to_2d.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.convert.to_2dimensional.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.convert.to_md.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.convert.to_multidimensional.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.core.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.core.repertoire_algebra.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.core.repertoire_algebra.cache_info.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.core.repertoire_algebra.cause_effect_info.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.core.repertoire_algebra.cause_info.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.core.repertoire_algebra.cause_repertoire.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.core.repertoire_algebra.clear_caches.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.core.repertoire_algebra.effect_info.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.core.repertoire_algebra.effect_repertoire.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.core.repertoire_algebra.expand_cause_repertoire.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.core.repertoire_algebra.expand_effect_repertoire.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.core.repertoire_algebra.expand_repertoire.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.core.repertoire_algebra.forward_cause_probability.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.core.repertoire_algebra.forward_cause_repertoire.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.core.repertoire_algebra.forward_effect_probability.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.core.repertoire_algebra.forward_effect_repertoire.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.core.repertoire_algebra.forward_probability.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.core.repertoire_algebra.forward_repertoire.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.core.repertoire_algebra.indices2nodes.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.core.repertoire_algebra.intrinsic_information.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.core.repertoire_algebra.null_concept.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.core.repertoire_algebra.null_distinction.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.core.repertoire_algebra.partitioned_repertoire.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.core.repertoire_algebra.potential_purviews.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.core.repertoire_algebra.repertoire.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.core.repertoire_algebra.transient_repertoires.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.core.repertoire_algebra.unconstrained_cause_repertoire.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.core.repertoire_algebra.unconstrained_effect_repertoire.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.core.repertoire_algebra.unconstrained_forward_cause_repertoire.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.core.repertoire_algebra.unconstrained_forward_effect_repertoire.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.core.repertoire_algebra.unconstrained_forward_repertoire.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.core.repertoire_algebra.unconstrained_repertoire.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.core.tpm.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.core.tpm.base.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.core.tpm.base.TPM.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.core.tpm.factored.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.core.tpm.factored.FactoredTPM.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.core.tpm.joint.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.core.tpm.joint.JointTPM.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.core.tpm.marginalization.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.core.tpm.marginalization.CauseMarginals.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.core.tpm.marginalization.cause_conditioned.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.core.tpm.marginalization.cause_marginal.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.core.tpm.marginalization.effect_marginal.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.core.unit.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.core.unit.Unit.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.cost.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.cost.AnalysisEstimate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.cost.BASE_MEMORY_BYTES.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.cost.CACHE_HEADROOM_BYTES.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.cost.MechanismWorkload.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.cost.PURVIEW_EVALUATION_UNITS.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.cost.REPERTOIRE_FACTOR.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.cost.SECONDS_PER_UNIT.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.cost.estimate_analysis.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.cost.mechanism_workloads.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.cost.partition_sweep_count.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.cost.round_memory_bytes.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.cost.runtime_seconds.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.cost.shard_cache_budget_bytes.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.cost.shard_memory_bytes.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.cost.units_for_runtime.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.direction.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.direction.Direction.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.display.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.display.description.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.display.description.Description.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.display.description.Inline.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.display.description.Nested.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.display.description.Row.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.display.description.Section.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.display.description.Table.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.display.description.card_label_width.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.display.description.intrinsic_specification_label.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.display.description.system_phi_label.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.display.mixin.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.display.mixin.Displayable.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.display.numbers.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.display.numbers.format_column.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.display.numbers.format_value.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.display.provenance.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.display.provenance.provenance_section.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.display.render.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.display.render.ascii.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.display.render.ascii.render.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.display.render.html.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.display.render.html.render.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.display.render.render.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.display.tables.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.display.tables.capped_table.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.display.tones.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.display.tones.tone_of.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.distribution.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.distribution.flatten.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.distribution.marginal.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.distribution.marginal_zero.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.distribution.max_entropy_distribution.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.distribution.normalize.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.distribution.purview.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.distribution.purview_size.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.distribution.repertoire_shape.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.distribution.unflatten.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.distribution.uniform_distribution.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.dynamics.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.dynamics.apply_clamp.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.dynamics.insert_clamp.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.dynamics.mean_dynamics.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.dynamics.most_probable_next_state.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.dynamics.number_of_units.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.dynamics.settle.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.dynamics.simulate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.estimate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.estimate.CoverageReport.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.estimate.PhiPosterior.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.estimate.SubstratePosterior.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.estimate.estimate_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.estimate.phi_posterior.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.ac_2019_three_candidate_election_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.actual_causation_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.basic_noisy_selfloop_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.basic_noisy_selfloop_system.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.basic_state.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.basic_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.basic_system.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.blackbox_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.cond_depend_tpm.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.cond_independ_tpm.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.differentiation_macro_tpm.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.differentiation_micro_1_system.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.differentiation_micro_tpm.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.disjunction_conjunction_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.fig10_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.fig14_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.fig16_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.fig1a_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.fig3a_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.fig3b_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.fig4_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.fig4_system.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.fig5a_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.fig5a_system.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.fig5b_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.fig5b_system.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.fig6_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.fig8_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.fig9_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.frog_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.frog_transition.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.gomez_p53_mdm2_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.grid3_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.grid3_system.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.iit4_2023_fig1a_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.iit4_2023_fig1a_system.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.iit4_2023_fig6a_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.iit4_2023_fig6a_system.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.iit4_2023_fig6b_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.iit4_2023_fig6b_system.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.iit4_2023_fig6c_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.iit4_2023_fig6c_system.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.iit4_2023_fig6d_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.iit4_2023_fig6d_system.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.iit4_2023_fig6e_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.iit4_2023_fig6e_system.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.iit4_2023_fig7_inactivated_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.iit4_2023_fig7_inactivated_system.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.iit4_2023_fig7_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.iit4_2023_fig7_system.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.macro_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.macro_system.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.marshall_2023_fig1_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.marshall_2023_fig2_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.marshall_2023_fig3_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.mayner_2026_monad_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.pqr_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.pqr_system.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.prevention_transition.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.propagation_delay_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.register_example.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.residue_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.residue_system.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.rule110_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.rule110_system.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.rule154_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.rule154_system.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.xor_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.examples.xor_system.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.exceptions.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.exceptions.ConditionallyDependentError.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.exceptions.IntractableCauseInversionError.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.exceptions.InvalidTPM.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.exceptions.MissingOptionalDependenciesError.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.exceptions.NonConvergenceError.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.exceptions.StateUnreachableBackwardsError.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.exceptions.StateUnreachableError.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.exceptions.StateUnreachableForwardsError.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.exceptions.TransitionUnreachableError.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.exceptions.WrongDirectionError.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.actual_causation.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.actual_causation.compute.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.actual_causation.compute.AlphaAggregationRegistry.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.actual_causation.compute.BackgroundStrategyRegistry.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.actual_causation.compute.PartitionedRepertoireSchemeRegistry.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.actual_causation.compute.account_distance.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.actual_causation.compute.probability_distance.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.actual_causation.formalism.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.actual_causation.formalism.AC2019Formalism.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.base.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.base.ACTUAL_CAUSATION_FORMALISM_REGISTRY.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.base.ActualCausationFormalism.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.base.ActualCausationFormalismRegistry.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.base.ApproximateFormalism.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.base.ErrorInfo.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.base.ExactFormalism.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.base.FORMALISM_REGISTRY.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.base.FormalismRegistry.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.base.MeasureNotCompatibleError.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.base.PhiFormalism.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.base.check_background_conditioning_compatible.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.base.check_measure_compatible.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.base.check_mechanism_partition_scheme_compatible.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.base.check_sia_tie_strategy_compatible.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.base.check_specification_measure_compatible.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit3.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit3.ces.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit3.concept.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit3.conceptual_info.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit3.evaluate_partition.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit3.formalism.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit3.formalism.IIT3Formalism.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit3.phi.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit3.sia.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit3.sia_partitions.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit4.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit4.NullCauseEffectStructure.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit4.NullSystemIrreducibilityAnalysis.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit4.SystemIrreducibilityAnalysis.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit4.bounds.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit4.bounds.BoundViolationError.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit4.bounds.UpperBound.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit4.bounds.big_phi_measured_bound.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit4.bounds.big_phi_upper_bound.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit4.bounds.check_phi_bound.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit4.bounds.distinction_phi_upper_bound.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit4.bounds.number_of_possible_distinctions.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit4.bounds.number_of_possible_distinctions_of_order.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit4.bounds.number_of_possible_relation_faces_with_unique_purviews.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit4.bounds.number_of_possible_relation_faces_with_unique_purviews_of_order.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit4.bounds.number_of_possible_relations.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit4.bounds.partition_phi_upper_bound.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit4.bounds.relation_phi_upper_bound.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit4.bounds.report.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit4.bounds.sum_phi_distinctions_upper_bound.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit4.bounds.sum_phi_relations_measured_bound.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit4.bounds.sum_phi_relations_upper_bound.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit4.bounds.system_phi_upper_bound.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit4.ces.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit4.congruent_distinctions.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit4.evaluate_partition.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit4.formalism.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit4.formalism.IIT4_2023Formalism.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit4.formalism.IIT4_2026Formalism.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit4.integration_value.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit4.intrinsic_differentiation_value.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit4.mechanism_state_pins.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit4.merge_pair_minima.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit4.normalization_factor.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit4.sia.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit4.sia_stride_search.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.iit4.system_intrinsic_information.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.queries.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.queries.all_distinctions.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.queries.cause_mip.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.queries.distinction.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.queries.effect_mip.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.queries.evaluate_partition.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.queries.find_mice.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.queries.find_mip.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.queries.mic.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.queries.mie.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.queries.phi.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.queries.phi_cause_mip.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.queries.phi_effect_mip.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.queries.phi_max.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.formalism.queries.sia.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.graph.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.graph.in_degree.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.graph.is_dag.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.graph.is_strongly_connected.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.graph.out_degree.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.graph.simple_cycles.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.graph.strongly_connected_components.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.graph.substrate_from_networkx.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.graph.substrate_to_dbn.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.graph.substrate_to_dbn_dict.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.graph.substrate_to_networkx.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.graph.system_to_networkx.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.graph.to_adjacency.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.graph.to_graphml.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.labels.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.labels.NodeLabels.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.labels.default_label.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.labels.default_labels.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.labels.label_with_state.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.labels.subscript.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.landscape.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.landscape.LandscapeSection.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.landscape.Perturbation.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.landscape.landscape_section.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.landscape.perturb.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.landscape.weight_axis.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.log.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.log.TqdmHandler.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.log.enable_logging.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.macro.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.macro.criteria.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.macro.criteria.Reason.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.macro.criteria.UnitVerdict.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.macro.criteria.canonical_units.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.macro.criteria.constituent_system.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.macro.criteria.judge_candidate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.macro.criteria.unit_integration.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.macro.estimate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.macro.estimate.SearchEstimate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.macro.estimate.estimate_search.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.macro.search.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.macro.search.ComplexesResult.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.macro.search.DecompositionVerdict.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.macro.search.EvaluationRecord.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.macro.search.IntrinsicUnitsResult.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.macro.search.SearchBounds.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.macro.search.candidate_mappings.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.macro.search.competing_systems.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.macro.search.complexes.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.macro.search.intrinsic_units.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.macro.search.is_intrinsic_unit.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.macro.search.valid_systems.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.macro.system.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.macro.system.MacroSystem.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.macro.tpm.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.macro.tpm.macro_tpms.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.macro.units.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.macro.units.MacroUnit.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.macro.units.blackbox.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.macro.units.coarse_grain.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.macro.units.micro_unit.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.matching.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.matching.differentiation.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.matching.differentiation.Differentiation.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.matching.environment.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.matching.environment.mixture.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.matching.environment.noise.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.matching.environment.point.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.matching.environment.sample.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.matching.environment.segment.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.matching.environment.superpose.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.matching.matching.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.matching.matching.MatchingAnalysis.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.matching.matching.MatchingResult.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.matching.perception.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.matching.perception.Perception.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.matching.system.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.matching.system.PerceptualSystem.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.matching.triggered_tpm.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.matching.triggered_tpm.TriggeredTPM.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.matching.triggered_tpm.build_triggered_tpm.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.matching.triggering.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.matching.triggering.TriggeringCoefficient.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.matching.triggering.triggering_coefficient.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.agents.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.agents.AGENTS.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.agents.CURSOR_READS.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.agents.CURSOR_STEPS.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.agents.PLUGIN.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.agents.PLUGIN_COMMANDS.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.agents.PLUGIN_REMOVAL.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.agents.PLUGIN_TIMEOUT.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.agents.REFERENCED.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.agents.RETIRED.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.agents.SENTINEL.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.agents.Target.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.agents.chosen.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.agents.confirm.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.agents.deliver.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.agents.describe.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.agents.describe_plugin.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.agents.detect.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.agents.install_step.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.agents.interactive.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.agents.plugin_removal_hint.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.agents.plugin_step.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.agents.remove.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.agents.remove_step.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.agents.resolve.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.agents.skill_names.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.content.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.content.TOPICS-attribute.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.content.config_reference.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.content.load.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.content.topics-function.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.install.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.install.BLOCK_BODY.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.install.CLAUDE_FILE.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.install.INSTRUCTIONS_FILE.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.install.block.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.install.build_parser.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.install.config_path.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.install.ensure_claude_import.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.install.install.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.install.registration.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.install.remove_block.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.install.remove_claude_import.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.install.remove_registration.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.install.run.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.install.uninstall.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.install.write_block.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.install.write_registration.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.prompts.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.prompts.register.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.resources.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.resources.register.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.server.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.server.TPM_MAX_STATES.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.server.analyze.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.server.build_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.server.campaign_status.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.server.collect_campaign.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.server.configure_parallel.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.server.describe_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.server.estimate_cost.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.server.inspect.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.server.list_examples.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.server.load_example.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.server.main.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.server.plot.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.server.prepare_campaign.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.mcp.server.prepare_ces_campaign.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.ces.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.ces.CESMeasureRegistry.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.ces.ces_distance.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.ces.emd.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.ces.emd_concept_distance.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.ces.emd_ground_distance.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.ces.sum_small_phi.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.distribution.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.distribution.ActualCausationMeasureRegistry.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.distribution.CompositeMeasureRegistry.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.distribution.DistanceResult.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.distribution.DistributionMeasureRegistry.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.distribution.OptionalEMD.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.distribution.StateAwareMeasureRegistry.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.distribution.StatefulDistributionMeasureRegistry.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.distribution.absolute_information_density.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.distribution.absolute_intrinsic_difference.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.distribution.absolute_pointwise_mutual_information.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.distribution.approximate_specified_state.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.distribution.effect_emd.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.distribution.emd.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.distribution.entropy_difference.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.distribution.generalized_intrinsic_difference.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.distribution.hamming_emd.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.distribution.iit_4_small_phi.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.distribution.iit_4_small_phi_no_absolute_value.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.distribution.information_density.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.distribution.intrinsic_difference.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.distribution.intrinsic_differentiation.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.distribution.intrinsic_information.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.distribution.intrinsic_specification.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.distribution.kld.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.distribution.l1.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.distribution.mp2q.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.distribution.np_suppress.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.distribution.pointwise_intrinsic_differentiation.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.distribution.pointwise_mutual_information.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.distribution.pointwise_mutual_information_vector.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.distribution.psq2.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.distribution.repertoire_distance.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.distribution.resolve_actual_causation_measure.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.distribution.resolve_distribution_measure.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.distribution.resolve_mechanism_measure.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.distribution.resolve_system_measure.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.distribution.weighted_pointwise_mutual_information.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.protocols.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.protocols.CompositeMeasure.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.protocols.DistributionMeasure.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.protocols.StateAwareMeasure.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.protocols.StatefulDistributionMeasure.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.protocols.satisfies_composite_measure.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.protocols.satisfies_distribution_measure.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.protocols.satisfies_state_aware_measure.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.measures.protocols.satisfies_stateful_distribution_measure.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.actual_causation.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.actual_causation.AcRepertoireIrreducibilityAnalysis.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.actual_causation.AcSystemIrreducibilityAnalysis.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.actual_causation.Account.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.actual_causation.CausalLink.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.actual_causation.DirectedAccount.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.actual_causation.Event.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.ces.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.ces.CauseEffectStructure.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.ces.InducedSubstructure.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.ces.PhiFold.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.ces.StructureView.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.cmp.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.cmp.EQUALITY_TOLERANCE.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.cmp.Orderable.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.cmp.OrderableByPhi.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.cmp.numpy_aware_eq.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.cmp.sametype.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.complex.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.complex.Complex.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.complex.ExcludedCandidate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.diff.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.diff.Change.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.diff.ResultDiff.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.distinction.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.distinction.Concept.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.distinction.Distinction.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.distinctions.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.distinctions.Distinctions.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.distinctions.ResolvedDistinctions.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.distinctions.UnresolvedDistinctions.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.distinctions.defaultdict_set.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.distinctions.distinction_table_row.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.explanation.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.explanation.Explanation.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.explanation.Finding.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.explanation.NullResultReason.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.explanation.RunnerUp.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.explanation.binding_direction_finding.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.explanation.requirement_binding_finding.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.explanation.runner_up_from_candidates.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.explanation.sia_runner_up_key.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.fmt.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.fmt.fmt_directed_joint_partition.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.fmt.fmt_extended_purview.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.fmt.fmt_mechanism.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.fmt.fmt_nodes.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.fmt.fmt_number.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.fmt.fmt_part.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.fmt.fmt_partition_arrow.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.fmt.fmt_transition.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.fmt.labels.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.fmt.state.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.mice.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.mice.MaximallyIrreducibleCause.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.mice.MaximallyIrreducibleCauseOrEffect.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.mice.MaximallyIrreducibleEffect.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.pandas.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.pandas.ToDictFromExplicitAttrsMixin.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.pandas.ToDictMixin.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.pandas.ToPandasMixin.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.pandas.distribution_rows.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.pandas.record_to_series.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.pandas.records_to_frame.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.pandas.state_multiindex.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.pandas.try_to_dict.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.partitions.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.partitions.DirectedBipartition.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.partitions.DirectedJointPartition.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.partitions.DirectedSetPartition.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.partitions.EdgeCut.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.partitions.JointBipartition.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.partitions.JointPartition.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.partitions.JointTripartition.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.partitions.NullCut.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.partitions.Part.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.partitions.TotalCut.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.partitions.concise_partition.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.protocols.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.protocols.AcSIAInterface.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.protocols.CauseEffectStructureInterface.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.protocols.SIAInterface.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.ria.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.ria.RepertoireIrreducibilityAnalysis.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.sia.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.sia.IIT3SystemIrreducibilityAnalysis.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.state_specification.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.state_specification.DistinctionPhiNormalizationRegistry.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.state_specification.StateSpecification.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.state_specification.SystemStateSpecification.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.state_specification.UnitState.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.models.state_specification.normalization_factor.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.numerics.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.numerics.eq.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.numerics.eq_mask.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.numerics.is_nonpositive.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.numerics.is_positive.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.numerics.is_zero.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.numerics.le.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.numerics.lt.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.numerics.positive_mask.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.numerics.round_to_precision.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.optimize.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.parallel.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.parallel.backends.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.parallel.backends.dask.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.parallel.backends.dask.DaskScheduler.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.parallel.backends.local_process.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.parallel.backends.local_process.LocalMapReduce.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.parallel.backends.local_process.LocalProcessScheduler.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.parallel.backends.local_thread.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.parallel.backends.local_thread.LocalThreadScheduler.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.parallel.backends.progress.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.parallel.backends.progress.LocalProgressBar.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.parallel.chunking.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.parallel.chunking.cost_balanced_partition.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.parallel.chunking.even_partition.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.parallel.chunking.iter_chunks.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.parallel.false.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.parallel.get.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.parallel.get_num_processes.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.parallel.map_reduce.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.parallel.sampling.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.parallel.sampling.WorkloadPlan.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.parallel.sampling.compute_chunksize.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.parallel.sampling.plan_workload.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.parallel.scheduler.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.parallel.scheduler.ChunkingPolicy.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.parallel.scheduler.ProgressPolicy.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.parallel.scheduler.Scheduler.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.parallel.scheduler.ShortcircuitPolicy.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.parallel.scheduler.default_scheduler.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.parallel.shortcircuit.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.partition.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.partition.AtomicJointPartition.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.partition.CompleteJointPartition.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.partition.PartitionRegistry.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.partition.SystemPartitionRegistry.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.partition.all_edge_cuts.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.partition.all_joint_partitions.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.partition.atomic_joint_partition.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.partition.bidirectional_edge_cuts.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.partition.bipartition.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.partition.bipartition_indices.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.partition.bipartition_of_one.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.partition.complete_joint_partition.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.partition.directed_bipartition.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.partition.directed_bipartition_indices.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.partition.directed_bipartition_of_one.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.partition.directed_bipartitions.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.partition.directed_bipartitions_cut_one.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.partition.directed_bipartitions_sequential.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.partition.directed_set_partitions.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.partition.directed_tripartition.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.partition.directed_tripartition_indices.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.partition.joint_bipartitions.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.partition.k_partitions.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.partition.mechanism_partitions.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.partition.num_edge_cuts.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.partition.reverse_elements.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.partition.system_partitions.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.partition.wedge_tripartitions.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.provenance.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.provenance.HasProvenance.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.provenance.Provenance.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.provenance.format_stem.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.provenance.read_metadata.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.provenance.save_dataframe.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.provenance.save_json.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.provenance.save_npz.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.provenance.stamp_wall_time.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.provenance.unique_path.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.relations.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.relations.AnalyticalFoldRelations.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.relations.AnalyticalRelations.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.relations.ConcreteRelations.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.relations.NullRelations.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.relations.Relation.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.relations.RelationComputationsRegistry.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.relations.RelationFace.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.relations.RelationSample.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.relations.Relations.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.relations.all_relations.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.relations.analytical_relations.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.relations.concrete_relations.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.relations.maximal_faces.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.relations.maximal_relations.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.relations.relation-function.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.relations.relations-function.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.relations.relations_table.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.resolve_ties.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.resolve_ties.CascadeLevel.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.resolve_ties.CascadeOutcome.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.resolve_ties.NotAComplex.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.resolve_ties.PhiObjectTieResolutionRegistry.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.resolve_ties.ResolutionContext.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.resolve_ties.cascade.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.resolve_ties.congruent_distinction_readings.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.resolve_ties.partitions.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.resolve_ties.purviews.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.resolve_ties.resolve.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.resolve_ties.resolve_ac_causal_link_tie.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.resolve_ties.resolve_ac_nexus_tie.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.resolve_ties.resolve_ac_partition_tie.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.resolve_ties.resolve_ac_sia_tie.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.resolve_ties.resolve_complex_tie.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.resolve_ties.resolve_iit3_complex_tie.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.resolve_ties.resolve_state_tie.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.resolve_ties.sias.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.resolve_ties.states.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.arrays.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.arrays.array_to_bytes.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.arrays.bytes_to_array.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.convert.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.convert.decode_document.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.convert.encode_document.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.convert.from_schema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.convert.to_schema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.dumps.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.frames.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.frames.dataframe_to_schema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.frames.schema_to_dataframe.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.load.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.loads.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.save.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.AcRIASchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.AcSIASchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.AccountSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.AnalysisSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.AnalyticalRelationsRefSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.AnalyticalRelationsSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.AxisScopeSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.CESSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.CESScopeSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.CESShardTaskSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.CampaignTaskOutputSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.CampaignTaskSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.CausalLinkSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.CellOutputSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.ComplexSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.ComplexesResultSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.ConceptSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.ConcreteRelationsRefSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.ConcreteRelationsSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.CoverageReportSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.DataFrameSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.DirectedAccountSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.DirectedBipartitionSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.DirectedJointPartitionSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.DirectedSetPartitionSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.DirectionSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.DistanceResultSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.DistinctionSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.DistinctionsSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.EdgeCutSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.EvaluationRecordSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.ExcludedCandidateSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.IIT3SIASchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.IIT4SIASchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.JointBipartitionSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.JointPartitionSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.JointTripartitionSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.MICECauseSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.MICEEffectSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.MICESchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.MacroSystemSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.MacroUnitSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.NoNodeLabelsSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.NodeLabelsSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.NullCESSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.NullCutSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.NullIIT4SIASchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.NullRelationsRefSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.NullRelationsSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.OptimizationResultSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.PartSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.PhiPosteriorSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.ProvenanceSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.RIASchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.RelationRefSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.RelationSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.ResolvedDistinctionsSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.RunnerUpSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.SIAShardTaskSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.ShardSpecSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.StateSpecificationSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.SubstratePosteriorSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.SubstrateSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.SweepResultSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.SystemSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.SystemStateSpecificationSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.TotalCutSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.TransitionSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.TransitionSystemSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.serialize.schema.UnresolvedDistinctionsSchema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate.Substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate.all_sias.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate.complexes.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate.irreducible_purviews.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate.irreducible_sias.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate.maximal_complex.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate.possible_complexes.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate.reachable_systems.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate.systems.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.build_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.build_tpm.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.create_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.ising.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.ising.energy.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.ising.probability.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.mechanism_combinations.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.mechanism_combinations.average.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.mechanism_combinations.composite.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.mechanism_combinations.first_necessary.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.mechanism_combinations.integrator.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.mechanism_combinations.maximal.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.mechanism_combinations.selective.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.mechanism_combinations.serial.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.mechanisms.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.mechanisms.and_gate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.mechanisms.biased_sigmoid.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.mechanisms.copy_gate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.mechanisms.democracy.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.mechanisms.gabor_gate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.mechanisms.majority.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.mechanisms.mismatch_corrector.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.mechanisms.mismatch_pattern_detector.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.mechanisms.modulated_sigmoid.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.mechanisms.or_gate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.mechanisms.resonator.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.mechanisms.sigmoid.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.mechanisms.sor_gate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.mechanisms.stabilized_sigmoid.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.mechanisms.weighted_mean.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.mechanisms.xor_gate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.random_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.unit_functions.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.unit_functions.boolean_function.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.unit_functions.gauss.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.unit_functions.gaussian.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.unit_functions.logical_and_function.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.unit_functions.logical_nand_function.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.unit_functions.logical_nor_function.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.unit_functions.logical_nparity_function.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.unit_functions.logical_or_function.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.unit_functions.logical_parity_function.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.unit_functions.naka_rushton.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.utils.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.utils.binary2spin.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.utils.input_weights.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.utils.inputs.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.utils.inverse_sigmoid.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.utils.map_to_floor_and_ceil.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.utils.sigmoid.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.utils.to_topological_ordering.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.utils.total_input_weight.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.utils.total_weighted_input.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.utils.weighted_inputs.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.weights.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.weights.bridge.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.weights.compensatory_pareto.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.weights.compensatory_potentiation.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.weights.copy_loop.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.weights.get_cross_laterals.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.weights.get_laterals.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.weights.join_weights.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.weights.lateral_indices_from.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.weights.nearest_neighbor.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.weights.normalize_inputs.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.weights.normalize_outputs.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.weights.on_weights.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.weights.pareto.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.weights.pareto_distribution.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.weights.potentiate_laterals.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.weights.potentiate_self.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.weights.separate_weights.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.substrate_generator.weights.symmetric_triu.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.sweep.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.system.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.system.System.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.timescale.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.timescale.dense_time.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.timescale.run_cm.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.timescale.run_tpm.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.timescale.sparse.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.timescale.sparse_time.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.validate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.validate.connectivity.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.validate.connectivity_matrix.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.validate.direction.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.validate.directions.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.validate.is_substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.validate.node_labels.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.validate.node_states.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.validate.non_overlapping.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.validate.relata.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.validate.state_length.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.validate.state_reachable.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.validate.substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.validate.system.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.validate.system_partition.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.validate.transition_states.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.connectivity.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.connectivity.plot_graph.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.connectivity.plot_system.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.connectivity.plot_tpm.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.distribution.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.distribution.all_states_str.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.distribution.plot_distribution.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.distribution.plot_repertoires.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.dynamics.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.dynamics.plot_dynamics.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.highlight_phi_fold.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.ising.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.ising.plot.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.ising.plot_inputs.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.ising.plot_sigmoid.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.plot_ces.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.projection.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.projection.CESProjection.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.projection.DEFAULT_MAX_ANALYTICAL_RELATIONS.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.projection.DistinctionNode.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.projection.EndpointNode.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.projection.InclusionOrder.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.projection.RelationEdge.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.projection.RelationFaceEdge.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.projection.project_ces.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.render.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.render.common.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.render.common.rescale.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.render.common.spread_coincident.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.render.embedding.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.render.embedding.embedding_positions.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.render.embedding.mds_embed.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.render.embedding.pca_embed.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.render.hypergraph.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.render.hypergraph.HypergraphGeometry.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.render.hypergraph.render_hypergraph.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.render.lattice.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.render.lattice.render_lattice.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.render.matrix.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.render.matrix.render_matrix.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.render.scatter.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.render.scatter.render_scatter.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.render.spectrum.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.render.spectrum.render_relation_spectrum.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.theme.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/_autosummary/pyphi.visualize.theme.Theme.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/api.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/configuration.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/examples.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/glossary.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/reference/index.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/theory/computational-complexity.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/theory/conditional-independence.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/theory/distinctions-and-relations.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/theory/index.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/theory/intrinsic-information.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/theory/macro-units.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/theory/overview.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/theory/phi-structure.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/theory/substrate-and-system.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/theory/system-integration.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/tutorials/actual-causation.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/tutorials/causal-reductionism.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/tutorials/index.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/tutorials/macro.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/tutorials/recursive-exclusion.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/tutorials/worked-example.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/whats-new-in-2.0.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/genindex.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/py-modindex.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/actual.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/analyze.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/automorphism.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/cache.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/cache/cache_utils.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/cache/content.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/cache/disk.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/cache/policy.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/cache/registry.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/campaign.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/campaign/merge.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/campaign/runner.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/campaign/scope.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/campaign/shards.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/compositional_state.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/condensation.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/conf/constraints.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/conf/formalism.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/conf/infrastructure.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/conf/numerics.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/conf/snapshot.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/connectivity.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/convert.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/core/repertoire_algebra.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/core/tpm/base.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/core/tpm/factored.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/core/tpm/joint.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/core/tpm/marginalization.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/core/unit.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/cost.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/direction.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/display/description.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/display/mixin.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/display/numbers.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/display/provenance.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/display/render.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/display/render/ascii.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/display/render/html.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/display/tables.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/display/tones.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/distribution.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/dynamics.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/estimate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/examples.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/exceptions.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/formalism/actual_causation/compute.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/formalism/actual_causation/formalism.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/formalism/base.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/formalism/iit3.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/formalism/iit3/formalism.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/formalism/iit4.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/formalism/iit4/bounds.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/formalism/iit4/formalism.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/formalism/queries.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/graph.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/labels.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/landscape.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/log.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/macro/criteria.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/macro/estimate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/macro/search.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/macro/system.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/macro/tpm.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/macro/units.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/matching/differentiation.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/matching/environment.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/matching/matching.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/matching/perception.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/matching/system.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/matching/triggered_tpm.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/matching/triggering.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/mcp/agents.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/mcp/content.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/mcp/install.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/mcp/prompts.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/mcp/resources.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/mcp/server.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/measures/ces.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/measures/distribution.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/measures/protocols.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/models/actual_causation.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/models/ces.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/models/cmp.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/models/complex.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/models/diff.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/models/distinction.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/models/distinctions.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/models/explanation.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/models/fmt.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/models/mice.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/models/pandas.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/models/partitions.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/models/protocols.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/models/ria.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/models/sia.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/models/state_specification.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/numerics.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/optimize.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/parallel.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/parallel/backends/dask.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/parallel/backends/local_process.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/parallel/backends/local_thread.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/parallel/backends/progress.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/parallel/chunking.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/parallel/sampling.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/parallel/scheduler.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/partition.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/provenance.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/relations.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/resolve_ties.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/serialize.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/serialize/arrays.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/serialize/convert.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/serialize/frames.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/serialize/schema.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/substrate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/substrate_generator.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/substrate_generator/ising.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/substrate_generator/mechanism_combinations.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/substrate_generator/mechanisms.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/substrate_generator/unit_functions.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/substrate_generator/utils.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/substrate_generator/weights.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/sweep.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/system.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/timescale.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/validate.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/visualize.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/visualize/connectivity.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/visualize/distribution.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/visualize/dynamics.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/visualize/ising.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/visualize/projection.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/visualize/render/common.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/visualize/render/embedding.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/visualize/render/hypergraph.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/visualize/render/lattice.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/visualize/render/matrix.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/visualize/render/scatter.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/visualize/render/spectrum.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/pyphi/visualize/theme.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/_modules/index.html</loc></url><url><loc>https://pyphi.readthedocs.io/en/latest/search.html</loc></url></urlset>